PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA19806
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 248aa    MW: 27736 Da    PI: 8.3706
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA19806genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.0001980102123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                ++C++C + F ++  L  H++ H
  Tp57577_TGAC_v2_mRNA19806  80 FSCNYCQRKFYSSQALGGHQNAH 102
                                89*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.35E-677108No hitNo description
PROSITE profilePS5015711.42780107IPR007087Zinc finger, C2H2
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MDLLRSEPCS SHNLNILFSE KKQTENEEKK HLLDLSLPSN YPCDDESKQE LNLINCFDTE  60
TSMNSSSESN HGNELEPRIF SCNYCQRKFY SSQALGGHQN AHKRERTMAK RGHKAAVSLD  120
FEHRYSSLAS LPLHGSYNRS SSLGIQVHSS MVHKPSYQTP FFGLSRSRAQ NQWQKLPMYS  180
QQAIGNLASE TDGSSLASVI PTRSGRFSPT KVQDGLIGGY WLGNSATTTC LKTKQEELQK  240
LDLSLKL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013465589.11e-127zinc finger-like protein
TrEMBLA0A072VN981e-127A0A072VN98_MEDTR; Uncharacterized protein
STRINGGLYMA13G44670.23e-89(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14393172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25160.13e-38zinc finger protein 3